run_metadata: 59947
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59947 | SRR12070768 | SRX8598387 | SRS6888922 | SRP268341 | PRJNA641144 | Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] | GSE152998 | Transcriptome Analysis | We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases | parent bioproject:PRJNA636815 | pubmed:34529939 | InVivoMetPRO M PRO | GSM4632818 | tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma | InVivoMetPRO M PRO | Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv | Zebrafish melanoma cell line | none provided by the submitter | cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma | GSM4632818 | GSM4632818: InVivoMetPRO M PRO; Danio rerio; RNA Seq | GSM4632818 | 1 | none provided by the submitter | GEO Accession:GSM4632818 | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | NextSeq 500 | SRP268341 | BS04348A_S15_L002_R1_001.fastq.gz BS04348A_S15_L002_R2_001.fastq.gz | fastq fastq | 1496781804.0 | 17818831.0 | GSM4632818 r8 | 0:28 1:56 | A:393260898;C:359049930;G:371448817;T:373008443;N:13716 | 28 | 56 | 393260898 | 359049930 | 371448817 | 373008443 | 13716 | SRX8598387 | SRS6888922 | SRA1089858 | GEO | Memorial Sloan Kettering Cancer Center | 2 | 0.0082 | 0.95015 | 0.00243 | 0.08385 | 0.9894 | 0.84242 | 0.34397 | 0.49899 | 28 | 56 | T | B | sc-like readlen | illumina | nextseq | unknown | cdna_unspecified | unknown | sc_generic | single_cell_generic | generic-scrnaseq-only | United States | 2020-06-22 | Undetermined | Undetermined | Cancer or Tumor | Cancer or Tumor |