run_metadata: 59901
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59901 | SRR12070794 | SRX8598390 | SRS6888925 | SRP268341 | PRJNA641144 | Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] | GSE152998 | Transcriptome Analysis | We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases | parent bioproject:PRJNA636815 | pubmed:34529939 | InVitroCoCultureINV C INV | GSM4632821 | tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma | InVitroCoCultureINV C INV | Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv | Zebrafish melanoma cell line | none provided by the submitter | cell line:ZMEL INV GFP|cell type:Zebrafish melanoma | GSM4632821 | GSM4632821: InVitroCoCultureINV C INV; Danio rerio; RNA Seq | GSM4632821 | 1 | none provided by the submitter | GEO Accession:GSM4632821 | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | NextSeq 500 | SRP268341 | BS04358A_S25_L001_R1_001.fastq.gz BS04358A_S25_L001_R2_001.fastq.gz | fastq fastq | 1524569508.0 | 18149637.0 | GSM4632821 r1 | 0:28 1:56 | A:408872899;C:351795969;G:368934874;T:394493201;N:472565 | 28 | 56 | 408872899 | 351795969 | 368934874 | 394493201 | 472565 | SRX8598390 | SRS6888925 | SRA1089858 | GEO | Memorial Sloan Kettering Cancer Center | 2 | 0.00744 | 0.94994 | 0.00129 | 0.08045 | 0.98462 | 0.82319 | 0.37339 | 0.51461 | 28 | 56 | T | B | sc-like readlen | illumina | nextseq | unknown | cdna_unspecified | unknown | sc_generic | single_cell_generic | generic-scrnaseq-only | United States | 2020-06-22 | Undetermined | Undetermined | Cancer or Tumor | Cancer or Tumor |