run_metadata: 59492
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59492 | SRR11922999 | SRX8468716 | SRS6769370 | SRP265917 | PRJNA637248 | Transcriptome of preovulatory follicles in zebrafish | PRJNA637248 | Other | In our previous study we successfully established an ideal model anovulatory nuclear progesterone receptor npr mutant zebrafish. In order to deciphering the molecular mechanism of ovulation we profiled the transcriptome of preovulatory follicles from npr mutant and wild type zebrafish using RNA sequencing RNA seq. | wild type maturation zebrafish 2 | WM2 | strain:ABstrain|age:90 dpf stage:adult|sex:female|tissue:follicles|biological replicate:biological replicate 2|BioSampleModel:Model organism or animal | WM2 | WM2 | WM2 | follicles from wild type zebrafish | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP265917 | loader:latf load | WM2_2.fq.gz WM2_1.fq.gz | fastq fastq | 5038968000.0 | 20965060.0 | WM2 1.fq.gz | 0:120.18 1:120.18 | A:1330786068;C:1205415239;G:1168349899;T:1334149863;N:266931 | 120 | 120 | 1330786068 | 1205415239 | 1168349899 | 1334149863 | 266931 | SRX8468716 | SRS6769370 | Guangdong Provincial People's Hospital | 2 | 0.96517 | 0.9637 | 0.02825 | 0.029 | 0.78281 | 0.78827 | 0.49178 | 0.5001 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2020-06-04 | Adult | Adult | Gonad | Reproductive System |