run_metadata: 59387
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59387 | SRR11869421 | SRX8419453 | SRS6730997 | SRP265157 | PRJNA635689 | Identification of potentially relevant genes for pathological cardiac hypertrophy | PRJNA635689 | Other | Identification of potentially relevant genes for excessive exercise induced pathological cardiac hypertrophy in zebrafish | RNAseq | ex3 | strain:not aplicable|isolate:not collected|breed:AB|cultivar:not collected|ecotype:not collected|age:6 mpf|dev stage:not collected|sex:male|tissue:heart|biomaterial provider:hunan normal university|genotype:WT|phenotype:Pathological cardiac hypertrophy|replicates:6|BioSampleModel:Model organism or animal | RNAseq of zebrafish : heart | EX H 3 | EX H 3 | RNA seq for Pathologically hypertrophied heart | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP265157 | EX_H_3_R1.fastq.gz EX_H_3_R2.fastq.gz | fastq fastq | 6259636144.0 | 20727272.0 | EX H 3 R1.fastq.gz | 0:151 1:151 | A:1778280447;C:1363197355;G:1403049077;T:1715079291;N:29974 | 151 | 151 | 1778280447 | 1363197355 | 1403049077 | 1715079291 | 29974 | SRX8419453 | SRS6730997 | SRA1080960 | Hunan Normal University|college of physical education | Hunan Normal University | 2 | 0.92733 | 0.88813 | 0.0791 | 0.07597 | 0.76297 | 0.76771 | 0.50252 | 0.50158 | 151 | 151 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2020-05-28 | Adult | Adult | Heart | Cardiovascular System |