run_metadata: 59177
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59177 | SRR11730559 | SRX8289695 | SRS6611323 | SRP260555 | PRJNA631119 | Effect of BDE 47 on zebrafish | PRJNA631119 | Other | Behavioral change and transcriptomics reveal the effect of BDE 47 on sonic hedgehog pathway to zebrafish early life stage Danio rerio | 100 3 | breed:AB strain12|age:7pdf 12|sex:pooled male and female|tissue:Whole fish|BioSampleModel:Model organism or animal | zebrafish12 | L 12 | L 12 | Illumina protocol | RNA-Seq | TRANSCRIPTOMIC | other | PAIRED | ILLUMINA | Illumina HiSeq 4000 | SRP260555 | 100_3.raw_2.fastq.gz 100_3.raw_1.fastq.gz | fastq fastq | 8196975600.0 | 27323252.0 | 100 3.raw 1.fastq.gz | 0:150 1:150 | A:2188101969;C:1877854538;G:2005324994;T:2125529773;N:164326 | 150 | 150 | 2188101969 | 1877854538 | 2005324994 | 2125529773 | 164326 | SRX8289695 | SRS6611323 | SRA1073316 | Shantou University|Medical Colleg | Shantou University | 2 | 0.94287 | 0.94017 | 0.1017 | 0.10057 | 0.66158 | 0.66358 | 0.49402 | 0.49056 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2020-05-08 | Larval | Larval | Whole Organism | All anatomical structures |