run_metadata: 59033
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59033 | SRR11577278 | SRX8145085 | SRS6507821 | SRP257630 | PRJNA627056 | Impact of social isolation on brain transcriptome in zebrafish | PRJNA627056 | Other | The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics. | 5 social 6 | 20170222B 5dpf soc | breed:Konstanz Wildtype|age:5 dpf|dev stage:larva|sex:not applicable|tissue:brain|biomaterial provider:Erin Schuman|collected by:Lukas Anneser|collection date:2017 02 22|sample type:whole brain|store cond:storage in trizol immediate extraction|treatment:social|replicate:6|BioSampleModel:Model organism or animal | RNA Seq of danio rerio: larval and juvenile brain | A018 | A018 | RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | SINGLE | ILLUMINA | NextSeq 500 | SRP257630 | 20170222B_5dpf_soc_S11_R1_001.fastq.gz | fastq | 1509062868.0 | 11709685.0 | 20170222B 5dpf soc S11 R1 001.fastq.gz | 0:128.87 1:0 | A:424881841;C:317025415;G:321339469;T:440828991;N:4987152 | 128 | 0 | 424881841 | 317025415 | 321339469 | 440828991 | 4987152 | SRX8145085 | SRS6507821 | SRA1067479 | Max Planck Institute for Brain Research|Synaptic Plasticity | Max Planck Institute for Brain Research | 1 | 0.92918 | 0.18084 | 0.67067 | 0.48693 | 113 | B | usable mapping rate | illumina | nextseq | unknown | poly_a | unknown | bulk | unknown | unknown | Germany | 2020-04-21 | Larval | Larval | Brain | Nervous System |