run_metadata: 59030
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59030 | SRR11577275 | SRX8145088 | SRS6507824 | SRP257630 | PRJNA627056 | Impact of social isolation on brain transcriptome in zebrafish | PRJNA627056 | Other | The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics. | 8 social 1 | 20171102 8dpf soc | breed:Konstanz Wildtype|age:8 dpf|dev stage:larva|sex:not applicable|tissue:brain|biomaterial provider:Erin Schuman|collected by:Lukas Anneser|collection date:2017 11 02|sample type:whole brain|store cond:storage in trizol immediate extraction|treatment:social|replicate:1|BioSampleModel:Model organism or animal | RNA Seq of danio rerio: larval and juvenile brain | D708 D502 | D708 D502 | RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | SINGLE | ILLUMINA | NextSeq 500 | SRP257630 | 20171102__8dpf_soc_S2_R1_001.fastq.gz | fastq | 1343770858.0 | 9948770.0 | 20171102 8dpf soc S2 R1 001.fastq.gz | 0:135.07 1:0 | A:393209270;C:281371562;G:280065221;T:388373414;N:751391 | 135 | 0 | 393209270 | 281371562 | 280065221 | 388373414 | 751391 | SRX8145088 | SRS6507824 | SRA1067479 | Max Planck Institute for Brain Research|Synaptic Plasticity | Max Planck Institute for Brain Research | 1 | 0.93753 | 0.16528 | 0.67478 | 0.48859 | 151 | B | usable mapping rate | illumina | nextseq | unknown | poly_a | unknown | bulk | unknown | unknown | Germany | 2020-04-21 | Larval | Larval | Brain | Nervous System |