run_metadata: 59023
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59023 | SRR11577268 | SRX8145095 | SRS6507831 | SRP257630 | PRJNA627056 | Impact of social isolation on brain transcriptome in zebrafish | PRJNA627056 | Other | The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics. | 5 social 2 | 20170209 5dpf soc | breed:Konstanz Wildtype|age:5 dpf|dev stage:larva|sex:not applicable|tissue:brain|biomaterial provider:Erin Schuman|collected by:Lukas Anneser|collection date:2017 02 09|sample type:whole brain|store cond:storage in trizol immediate extraction|treatment:social|replicate:2|BioSampleModel:Model organism or animal | RNA Seq of danio rerio: larval and juvenile brain | A005 | A005 | RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | SINGLE | ILLUMINA | NextSeq 500 | SRP257630 | 20170209_5dpf_soc_S3_R1_001.fastq.gz | fastq | 932021340.0 | 8105951.0 | 20170209 5dpf soc S3 R1 001.fastq.gz | 0:114.98 1:0 | A:242483339;C:210201362;G:210814912;T:264386634;N:4135093 | 114 | 0 | 242483339 | 210201362 | 210814912 | 264386634 | 4135093 | SRX8145095 | SRS6507831 | SRA1067479 | Max Planck Institute for Brain Research|Synaptic Plasticity | Max Planck Institute for Brain Research | 1 | 0.95059 | 0.13154 | 0.66099 | 0.48071 | 86 | B | usable mapping rate | illumina | nextseq | unknown | poly_a | unknown | bulk | unknown | unknown | Germany | 2020-04-21 | Larval | Larval | Brain | Nervous System |