run_metadata: 59010
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59010 | SRR11577255 | SRX8145108 | SRS6507844 | SRP257630 | PRJNA627056 | Impact of social isolation on brain transcriptome in zebrafish | PRJNA627056 | Other | The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics. | 8 iso 5 | 20171026 8dpf iso | breed:Konstanz Wildtype|age:8 dpf|dev stage:larva|sex:not applicable|tissue:brain|biomaterial provider:Erin Schuman|collected by:Lukas Anneser|collection date:2017 10 26|sample type:whole brain|store cond:storage in trizol immediate extraction|treatment:isolated|replicate:5|BioSampleModel:Model organism or animal | RNA Seq of danio rerio: larval and juvenile brain | D710 D506 | D710 D506 | RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | SINGLE | ILLUMINA | NextSeq 500 | SRP257630 | 20171026_8dpf_iso_S20_R1_001.fastq.gz | fastq | 2826413292.0 | 20452973.0 | 20171026 8dpf iso S20 R1 001.fastq.gz | 0:138.19 1:0 | A:865014614;C:559489084;G:552925517;T:847716596;N:1267481 | 138 | 0 | 865014614 | 559489084 | 552925517 | 847716596 | 1267481 | SRX8145108 | SRS6507844 | SRA1067479 | Max Planck Institute for Brain Research|Synaptic Plasticity | Max Planck Institute for Brain Research | 1 | 0.92608 | 0.2105 | 0.67903 | 0.49051 | 151 | B | usable mapping rate | illumina | nextseq | unknown | poly_a | unknown | bulk | unknown | unknown | Germany | 2020-04-21 | Larval | Larval | Brain | Nervous System |