run_metadata: 58995
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58995 | SRR11577240 | SRX8145123 | SRS6507859 | SRP257630 | PRJNA627056 | Impact of social isolation on brain transcriptome in zebrafish | PRJNA627056 | Other | The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics. | 5 iso 3 | 20170210A 5dpf iso | breed:Konstanz Wildtype|age:5 dpf|dev stage:larva|sex:not applicable|tissue:brain|biomaterial provider:Erin Schuman|collected by:Lukas Anneser|collection date:2017 02 10|sample type:whole brain|store cond:storage in trizol immediate extraction|treatment:isolated|replicate:3|BioSampleModel:Model organism or animal | RNA Seq of danio rerio: larval and juvenile brain | A012 | A012 | RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | SINGLE | ILLUMINA | NextSeq 500 | SRP257630 | 20170210A_5dpf_iso_S6_R1_001.fastq.gz | fastq | 1518854121.0 | 12280862.0 | 20170210A 5dpf iso S6 R1 001.fastq.gz | 0:123.68 1:0 | A:416560027;C:326775060;G:324773078;T:444339405;N:6406551 | 123 | 0 | 416560027 | 326775060 | 324773078 | 444339405 | 6406551 | SRX8145123 | SRS6507859 | SRA1067479 | Max Planck Institute for Brain Research|Synaptic Plasticity | Max Planck Institute for Brain Research | 1 | 0.94696 | 0.13785 | 0.65969 | 0.50295 | 93 | B | usable mapping rate | illumina | nextseq | unknown | poly_a | unknown | bulk | unknown | unknown | Germany | 2020-04-21 | Larval | Larval | Brain | Nervous System |