run_metadata: 58985
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58985 | SRR11610429 | SRX8176693 | SRS6536448 | SRP258542 | PRJNA626778 | Transcriptome sequencing for larvae and adult zebrafish liver post difenoconazole exposure | PRJNA626778 | Metagenomics | RNA seq was performed on zebrafish larvae post embryos exposed to 0.400 mg/L difenoconazole for 120 h and on zebrafish liver post 21 d exposure in triplicate using Illumina HiSeq X Ten | T04 | cultivar:WT type AB strain|age:8 days|dev stage:larvae|sex:male|tissue:larvae whole body|treatment:D larvae1|BioSampleModel:Model organism or animal | NS 1 | D larvae1 | D larvae1 | D larvae1 | RNA-Seq | TRANSCRIPTOMIC | RANDOM | PAIRED | ILLUMINA | HiSeq X Ten | SRP258542 | T04_1.fq.gz T04_2.fq.gz | fastq fastq | 9470209800.0 | 31567366.0 | T04 1.fq.gz | 0:150 1:150 | A:2512151104;C:2206180833;G:2224120159;T:2526778146;N:979558 | 150 | 150 | 2512151104 | 2206180833 | 2224120159 | 2526778146 | 979558 | SRX8176693 | SRS6536448 | SRA1069066 | Zhejiang Academy of Agricultural Sciences|Institute of Quality and Standard for Agroproducts | Zhejiang Academy of Agricultural Sciences | 2 | 0.94469 | 0.94918 | 0.09968 | 0.09817 | 0.65224 | 0.6538 | 0.45967 | 0.46068 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2020-04-26 | Larval | Larval | Trunk | Surface Structure |