run_metadata: 58981
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58981 | SRR11610425 | SRX8176697 | SRS6536452 | SRP258542 | PRJNA626778 | Transcriptome sequencing for larvae and adult zebrafish liver post difenoconazole exposure | PRJNA626778 | Metagenomics | RNA seq was performed on zebrafish larvae post embryos exposed to 0.400 mg/L difenoconazole for 120 h and on zebrafish liver post 21 d exposure in triplicate using Illumina HiSeq X Ten | T08 | cultivar:WT type AB strain|age:7 months|dev stage:adult|sex:male|tissue:liver|treatment:ck liver2|BioSampleModel:Model organism or animal | HS 2 | ck liver2 | ck liver2 | ck liver2 | RNA-Seq | TRANSCRIPTOMIC | RANDOM | PAIRED | ILLUMINA | HiSeq X Ten | SRP258542 | T08_2.fq.gz T08_1.fq.gz | fastq fastq | 7619471100.0 | 25398237.0 | T08 1.fq.gz | 0:150 1:150 | A:1975421444;C:1810415163;G:1841274324;T:1992275976;N:84193 | 150 | 150 | 1975421444 | 1810415163 | 1841274324 | 1992275976 | 84193 | SRX8176697 | SRS6536452 | SRA1069066 | Zhejiang Academy of Agricultural Sciences|Institute of Quality and Standard for Agroproducts | Zhejiang Academy of Agricultural Sciences | 2 | 0.93693 | 0.95463 | 0.03222 | 0.03219 | 0.74503 | 0.74718 | 0.39856 | 0.40885 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2020-04-26 | Adult | Adult | Liver | Liver and Biliary System |