run_metadata: 58874
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58874 | SRR11509895 | SRX8082005 | SRS6450124 | SRP255712 | PRJNA623798 | Single cell lineage tracing on endogenous scarring sites scLOESS | PRJNA623798 | Other | Lineage recording of zebrafish embryogenesis reveals early cell fate commitment | 1g cDNA library fetch from 10x Genomics Chromium Single Cell 3 Library was amplified by extra 15 cycles. and then split into 90 equal aliquots to amplify each target by 25 cycles and purified amplicons were pooled into an equimolar mixture. 3 independent replicates in total. | Target specific Amplification of Single Cell cDNA Library | SCC | strain:AB line|age:7dpf|dev stage:larvae|sex:not applicable|tissue:Whole organism|collection date:2018 07 26|BioSampleModel:Model organism or animal | Single cell cDNA library Amplicon of zebrafish larva replicate 2 | SCC replicate2 | SCC replicate2 | 1g cDNA library fetch from 10x Genomics Chromium Single Cell 3 Library was amplified by extra 15 cycles. and then split into 90 equal aliquots to amplify each target by 25 cycles and purified amplicons were pooled into an equimolar mixture. PCR replicate 2. | AMPLICON | TRANSCRIPTOMIC SINGLE CELL | PCR | PAIRED | ILLUMINA | HiSeq X Ten | SRP255712 | SCC-replicate2_R2.fq.gz SCC-replicate2_R1.fq.gz | fastq fastq | 19858547700.0 | 66195159.0 | SCC replicate2 R1.fq.gz | 0:150 1:150 | A:4363166112;C:4066433314;G:4155737160;T:7269480395;N:3730719 | 150 | 150 | 4363166112 | 4066433314 | 4155737160 | 7269480395 | 3730719 | SRX8082005 | SRS6450124 | SRA1063780 | Sun Yat- sen University|Life Sicence School | Sun Yat- sen University | 2 | 0.025 | 0.97152 | 0.00079 | 0.00143 | 0.99746 | 0.97668 | 0.74358 | 0.46727 | 150 | 150 | T | B | mate1 technical by mapping diff | illumina | hiseq_era | unknown | random_priming | unknown | sc | single_cell_droplet | 10x | China | 2020-04-09 | Larval | Larval | Whole Organism | All anatomical structures |