run_metadata: 58564

This data as json

rowid	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	study.attributes	study.PMIDs	sample.description	sample.title	sample.alias	sample.centername	sample.attributes	GEOsample.title	GEOsample.dataprocessing	GEOsample.source	GEOsample.treatmentprotocol	GEOsample.extractprotocol	GEOsample.growthprotocol	GEOsample.characteristics	GEOsample.accession	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_construction_protocol	experiment.attributes	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.spot_descriptor	experiment.study_ref	run.title	run.attributes	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.r3_length	run.r4_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.n_mates	seqdetective.mapping_rate.mate1	seqdetective.mapping_rate.mate2	seqdetective.nofeature_rate.mate1	seqdetective.nofeature_rate.mate2	seqdetective.sparsity.mate1	seqdetective.sparsity.mate2	seqdetective.pos_strand_rate.mate1	seqdetective.pos_strand_rate.mate2	seqdetective.readlen.mate1	seqdetective.readlen.mate2	seqdetective.judgement.mate1	seqdetective.judgement.mate2	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	tech_variant	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
58564	SRR11365242	SRX7966549	SRS6352055	SRP253641	PRJNA613954	Liver sequencing post zebrafish fads2 knockout	PRJNA613954	Other	Zebrafish homozygous with fads2 gene deleted were obtained using CRISPR Cas9 technology and homozygous and wild type livers of the same age were sampled and sequenced by RNA seq.					fads2 liver 1		strain:not applicable\|isolate:not applicable\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:90 days\|sex:male\|tissue:liver\|replicate:replicate =fads2 1/fads2 2/fads2 3\|BioSampleModel:Model organism or animal									fads2 knockout zebrafish	A01	A01	fads2 knockout zebrafish liver sample			RNA-Seq	TRANSCRIPTOMIC	other	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP253641			FAD2_data0_B0828nova1_R2_001.fastq.gz FAD2_data1_B0828nova1_R1_001.fastq.gz FAD3_data0_B0828nova1_R2_001.fastq.gz FAD3_data1_B0828nova1_R1_001.fastq.gz FAD3_data1_B0906lane2_R2_001.fastq.gz FAD3_data2_B0906lane2_R1_001.fastq.gz FAD4_data1_B0828nova1_R1_001.fastq.gz FAD4_data1_B0828nova1_R2_001.fastq.gz	fastq fastq fastq fastq fastq fastq fastq fastq	18781366410.0	62189955.0	FAD2 data0 B0828nova1 R2 001.fastq.gz	0:151 1:151	A:4919026740;C:4418984876;G:4547018069;T:4895678424;N:658301	151	151			4919026740	4418984876	4547018069	4895678424	658301	SRX7966549	SRS6352055	SRA1058080	Huazhong Agricultural University\|Fisheries College	Huazhong Agricultural University	2	0.93932	0.92655	0.04892	0.04772	0.80781	0.80963	0.46402	0.45061	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	unknown	bulk	unknown	unknown		China	2020-03-23	Adult	Adult	Liver	Liver and Biliary System