run_metadata: 58563
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58563 | SRR11365241 | SRX7966550 | SRS6352054 | SRP253641 | PRJNA613954 | Liver sequencing post zebrafish fads2 knockout | PRJNA613954 | Other | Zebrafish homozygous with fads2 gene deleted were obtained using CRISPR Cas9 technology and homozygous and wild type livers of the same age were sampled and sequenced by RNA seq. | WT liver A | strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:90 days|sex:male|tissue:liver|replicate:replicate = WT 1 /WT 2/WT 3|BioSampleModel:Model organism or animal | Wild type zebrafish | A02 | A02 | Wild type zebrafish liver samples | RNA-Seq | TRANSCRIPTOMIC | other | PAIRED | ILLUMINA | Illumina HiSeq 4000 | SRP253641 | WT2_data1_B0828nova1_R1_001.fastq.gz WT2_data1_B0828nova1_R2_001.fastq.gz WT3_data1_B0828nova1_R1_001.fastq.gz WT3_data1_B0828nova1_R2_001.fastq.gz WT4_data1_B0828nova1_R1_001.fastq.gz WT4_data1_B0828nova1_R2_001.fastq.gz | fastq fastq fastq fastq fastq fastq | 18864557444.0 | 62465422.0 | WT2 data1 B0828nova1 R1 001.fastq.gz | 0:151 1:151 | A:4867225346;C:4512764116;G:4625458379;T:4858409569;N:700034 | 151 | 151 | 4867225346 | 4512764116 | 4625458379 | 4858409569 | 700034 | SRX7966550 | SRS6352054 | SRA1058080 | Huazhong Agricultural University|Fisheries College | Huazhong Agricultural University | 2 | 0.9457 | 0.94524 | 0.02545 | 0.02539 | 0.86525 | 0.86576 | 0.25803 | 0.26139 | 151 | 151 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2020-03-23 | Adult | Adult | Liver | Liver and Biliary System |