run_metadata: 5793
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5793 | ERR1955208 | ERX2020800 | ERS1697077 | ERP017053 | PRJEB15333 | Transposon driven transcription is a conserved feature of vertebrate spermatogenesis and transcript evolution | ena-STUDY-EMBL EUROPEAN BIOINFORMATICS INSTITUTE-07-09-2016-10:25:55:499-247 | Other | In order to better understand the features associated with male germline transcription we profiled the RNA expression in a number of germline cell types. These include spermatogonial stem cells spermatocytes and round spermatids in mouse and spermatocytes in rat. We also profiled the transcription in zebrafish testes. As a consequence it became apparent that transposable elements are driving considerable lncRNA expression in the later stages of spermatogenesis. This is particularly apparent in the case of endogenous retroviruses in rodents. | ENA FIRST PUBLIC:2017 01 31|ENA LAST UPDATE:2017 05 08 | Transcriptional profiling of zebrafish testes for analysis of conserved repeat element associations | SAMEA104033184 | EMBL EUROPEAN BIOINFORMATICS INSTITUTE | ENA FIRST PUBLIC:2017 05 10T17:01:28Z|ENA LAST UPDATE:2017 04 28T10:34:37Z|External Id:SAMEA104033184|INSDC center name:EMBL EUROPEAN BIOINFORMATICS INSTITUTE|INSDC first public:2017 05 10T17:01:28Z|INSDC last update:2017 04 28T10:34:37Z|INSDC status:public|Submitter Id:Zebrafish.Testis 2|common name:zebrafish|sample name:Zebrafish.Testis 2|scientific name:Danio rerio|strain:AB|tissue type:testis | Illumina HiSeq 2000 paired end sequencing | ena EXPERIMENT EMBL EUROPEAN BIOINFORMATICS INSTITUTE 03 05 2017 17:32:41:660 16 | unspecified | 1 | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP017053 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2017 05 10|ENA LAST UPDATE:2018 11 16 | zebrafish_testis_2.conserved.1.fastq.gz zebrafish_testis_2.conserved.2.fastq.gz | fastq fastq | 46555372886.0 | 230472143.0 | ena RUN EMBL EUROPEAN BIOINFORMATICS INSTITUTE 03 05 2017 17:32:41:660 16 | 0:101 1:101 | A:12260062264;C:10888457642;G:11605642683;T:11637267744;N:163942553 | 101 | 101 | 12260062264 | 10888457642 | 11605642683 | 11637267744 | 163942553 | ERX2020800 | ERS1697077 | ERA904389 | EMBL EUROPEAN BIOINFORMATICS INSTITUTE|European Nucleotide Archive | EMBL EUROPEAN BIOINFORMATICS INSTITUTE | 2 | 0.93165 | 0.92785 | 0.29822 | 0.32141 | 0.71386 | 0.71971 | 0.66173 | 0.63843 | 101 | 101 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2017-01-31 | Undetermined | Undetermined | Gonad | Reproductive System |