run_metadata: 57228
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57228 | SRR11267523 | SRX7874131 | SRS6282435 | SRP252014 | PRJNA611476 | RNAseq between mutant and wild type zebrafish at different developmental stages | PRJNA611476 | Other | 4D wt 2 | strain:Abtu|ecotype:wild type|dev stage:4dpf|sex:missing|tissue:embryos|replicate:biological replicate 2|BioSampleModel:Model organism or animal | 4dpf wild type replicate 2 | 4D wt 2 | 4D wt 2 | common method | RNA-Seq | TRANSCRIPTOMIC | RANDOM | PAIRED | ILLUMINA | Illumina HiSeq 2000 | SRP252014 | s-4DW2_RRA129722-V_2.fq.gz s-4DW2_RRA129722-V_1.fq.gz | fastq fastq | 6231414600.0 | 20771382.0 | s 4DW2 RRA129722 V 1.fq.gz | 0:150 1:150 | A:1565996983;C:1561905686;G:1563088801;T:1540306966;N:116164 | 150 | 150 | 1565996983 | 1561905686 | 1563088801 | 1540306966 | 116164 | SRX7874131 | SRS6282435 | SRA1052323 | Sun Yat-sen University|College of Life Sciences | Sun Yat-sen University | 2 | 0.96185 | 0.96048 | 0.02574 | 0.02597 | 0.7525 | 0.75246 | 0.48131 | 0.4798 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2020-03-09 | Larval | Larval | Embryo Imprecise | All anatomical structures |