run_metadata: 57213
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57213 | SRR11267508 | SRX7874146 | SRS6282450 | SRP252014 | PRJNA611476 | RNAseq between mutant and wild type zebrafish at different developmental stages | PRJNA611476 | Other | FE mut 3 | strain:Abtu|ecotype:mutant|dev stage:adult|sex:female|tissue:eye|replicate:biological replicate 3|BioSampleModel:Model organism or animal | mutant female eyes replicate 3 | FE mut 3 | FE mut 3 | common method | RNA-Seq | TRANSCRIPTOMIC | RANDOM | PAIRED | ILLUMINA | Illumina HiSeq 2000 | SRP252014 | s-9-MU3FE_RRA121651-V_1.fq.gz s-9-MU3FE_RRA121651-V_2.fq.gz | fastq fastq | 6656295300.0 | 22187651.0 | s 9 MU3FE RRA121651 V 1.fq.gz | 0:150 1:150 | A:1847801770;C:1499187682;G:1491392362;T:1817671236;N:242250 | 150 | 150 | 1847801770 | 1499187682 | 1491392362 | 1817671236 | 242250 | SRX7874146 | SRS6282450 | SRA1052323 | Sun Yat-sen University|College of Life Sciences | Sun Yat-sen University | 2 | 0.92627 | 0.92542 | 0.122 | 0.12099 | 0.68067 | 0.68166 | 0.48197 | 0.48852 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2020-03-09 | Adult | Adult | Eye | Sensory System |