run_metadata: 56339
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56339 | SRR10948650 | SRX7615726 | SRS6049035 | SRP243861 | PRJNA602594 | cold induce zebrafish gill transcriptome sequence | PRJNA602594 | Other | The zebrafish gill RNA seq data for different temperature | WT2 | w10gill 10 | W10 8 10a | strain:not applicable|isolate:not collected|breed:not collected|cultivar:not applicable|ecotype:not applicable|age:6 months|sex:pooled male and female|tissue:gill|sample type:tissue sample|treatment:8 cold 6h|BioSampleModel:Model organism or animal | RNA Seq of wt zebrafish:adult pooled male and female adductor gill | W 10 | W 10 | polyT enrichment | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP243861 | 7-W10gill_R1.fq.gz 7-W10gill_R2.fq.gz | fastq fastq | 5491391700.0 | 18304639.0 | 7 W10gill R1.fq.gz | 0:150 1:150 | A:1515889569;C:1220781777;G:1237527823;T:1517109229;N:83302 | 150 | 150 | 1515889569 | 1220781777 | 1237527823 | 1517109229 | 83302 | SRX7615726 | SRS6049035 | SRA1029833 | Shanghai Ocean University|College of Fisheries and Life Science | Shanghai Ocean University | 2 | 0.90595 | 0.90718 | 0.13983 | 0.13717 | 0.69406 | 0.69416 | 0.50316 | 0.50561 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2020-01-22 | Adult | Adult | Gill | Respiratory System |