run_metadata: 56338
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56338 | SRR10948649 | SRX7615727 | SRS6049032 | SRP243861 | PRJNA602594 | cold induce zebrafish gill transcriptome sequence | PRJNA602594 | Other | The zebrafish gill RNA seq data for different temperature | WT3 | w16gill 16 | W16 8 16a | strain:not applicable|isolate:not collected|breed:not collected|cultivar:not applicable|ecotype:not applicable|age:6 months|sex:pooled male and female|tissue:gill|sample type:tissue sample|treatment:8 cold 12h|BioSampleModel:Model organism or animal | RNA Seq of wt zebrafish:adult pooled male and female adductor gill | W 16 | W 16 | polyT enrichment | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP243861 | 8-W16gill_R2.fq.gz 8-W16gill_R1.fq.gz | fastq fastq | 4257006300.0 | 14190021.0 | 8 W16gill R1.fq.gz | 0:150 1:150 | A:1178956453;C:941379863;G:962238308;T:1174367386;N:64290 | 150 | 150 | 1178956453 | 941379863 | 962238308 | 1174367386 | 64290 | SRX7615727 | SRS6049032 | SRA1029833 | Shanghai Ocean University|College of Fisheries and Life Science | Shanghai Ocean University | 2 | 0.91201 | 0.91293 | 0.14747 | 0.14512 | 0.70138 | 0.70193 | 0.51012 | 0.50331 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2020-01-22 | Adult | Adult | Gill | Respiratory System |