run_metadata: 56337
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56337 | SRR10948648 | SRX7615728 | SRS6049034 | SRP243861 | PRJNA602594 | cold induce zebrafish gill transcriptome sequence | PRJNA602594 | Other | The zebrafish gill RNA seq data for different temperature | mutant1 | Dgill 28 | D 28 a | strain:not applicable|isolate:not collected|breed:not collected|cultivar:not applicable|ecotype:not applicable|age:6 months|sex:pooled male and female|tissue:gill|sample type:tissue sample|treatment:no cold|BioSampleModel:Model organism or animal | RNA Seq of dusp zebrafish:adult pooled male and female adductor gill | D 28 | D 28 | polyT enrichment | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP243861 | 17-Dgill_R1.fq.gz 17-Dgill_R2.fq.gz | fastq fastq | 15464885400.0 | 51549618.0 | 17 Dgill R1.fq.gz | 0:150 1:150 | A:4239813270;C:3475699051;G:3496941841;T:4252196734;N:234504 | 150 | 150 | 4239813270 | 3475699051 | 3496941841 | 4252196734 | 234504 | SRX7615728 | SRS6049034 | SRA1029833 | Shanghai Ocean University|College of Fisheries and Life Science | Shanghai Ocean University | 2 | 0.91861 | 0.91958 | 0.12044 | 0.1182 | 0.67456 | 0.67393 | 0.49751 | 0.496 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2020-01-22 | Adult | Adult | Gill | Respiratory System |