run_metadata: 56060
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56060 | SRR10854657 | SRX7525036 | SRS5964471 | SRP240714 | PRJNA599540 | Danio rerio breed:TU Raw sequence reads | PRJNA599540 | Whole Genome Sequencing | Testis of zebrafish e2f5 mutation RNA sequencing | testis of zebrafish e2f5 mutation 1# | breed:zebrafish TU|dev stage:adult|sex:male|tissue:testis|genotype:e2f5 mutation 1#|sample type:tissue sample|BioSampleModel:Model organism or animal | testis of zebrafish e2f5 mutation 1# | 1A | 1A | Five testis were dissected from an mutation adult zebrafish RNA extraction follows standard methods then the library was built according to standard methods. | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | PAIRED | ILLUMINA | HiSeq X Ten | SRP240714 | A1_R1.fq.gz A1_R2.fq.gz | fastq fastq | 6164618400.0 | 20548728.0 | A1 R1.fq.gz | 0:150 1:150 | A:1649311047;C:1437521302;G:1430634813;T:1646989330;N:161908 | 150 | 150 | 1649311047 | 1437521302 | 1430634813 | 1646989330 | 161908 | SRX7525036 | SRS5964471 | SRA1022555 | Ocean University of China|Institute of Evolution & Marine Biodiversity | Ocean University of China | 2 | 0.94202 | 0.94471 | 0.06268 | 0.0626 | 0.64551 | 0.65283 | 0.50741 | 0.51019 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2020-01-08 | Adult | Adult | Gonad | Reproductive System |