run_metadata: 56059
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56059 | SRR10854656 | SRX7525037 | SRS5964472 | SRP240714 | PRJNA599540 | Danio rerio breed:TU Raw sequence reads | PRJNA599540 | Whole Genome Sequencing | Testis of zebrafish e2f5 mutation RNA sequencing | testis of zebrafish wild type 1# | breed:zebrafish TU|dev stage:adult|sex:male|tissue:testis|genotype:wild type 1#|sample type:tissue sample|BioSampleModel:Model organism or animal | testis of zebrafish wild type 1# | 1B | 1B | Five testis were dissected from an normal adult zebrafish RNA extraction follows standard methods then the library was built according to standard methods. | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | PAIRED | ILLUMINA | HiSeq X Ten | SRP240714 | B1_R1.fq.gz B1_R2.fq.gz | fastq fastq | 6288047400.0 | 20960158.0 | B1 R1.fq.gz | 0:150 1:150 | A:1678186708;C:1472395501;G:1463062231;T:1674239286;N:163674 | 150 | 150 | 1678186708 | 1472395501 | 1463062231 | 1674239286 | 163674 | SRX7525037 | SRS5964472 | SRA1022555 | Ocean University of China|Institute of Evolution & Marine Biodiversity | Ocean University of China | 2 | 0.94474 | 0.9457 | 0.05797 | 0.05677 | 0.65399 | 0.65971 | 0.50929 | 0.50392 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2020-01-08 | Adult | Adult | Gonad | Reproductive System |