run_metadata: 56058
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56058 | SRR10854655 | SRX7525038 | SRS5964473 | SRP240714 | PRJNA599540 | Danio rerio breed:TU Raw sequence reads | PRJNA599540 | Whole Genome Sequencing | Testis of zebrafish e2f5 mutation RNA sequencing | testis of zebrafish e2f5 mutation 2# | breed:zebrafish TU|dev stage:adult|sex:male|tissue:testis|genotype:e2f5 mutation 2#|sample type:tissue sample|BioSampleModel:Model organism or animal | testis of zebrafish e2f5 mutation 2# | 2A | 2A | Five testis were dissected from an mutation adult zebrafish RNA extraction follows standard methods then the library was built according to standard methods. | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | PAIRED | ILLUMINA | HiSeq X Ten | SRP240714 | A1_H7NNKALXX_L2_2.clean.fq.gz A1_H7NNKALXX_L2_1.clean.fq.gz | fastq fastq | 6093225300.0 | 20310751.0 | A1 H7NNKALXX L2 1.clean.fq.gz | 0:150 1:150 | A:1625173848;C:1409934388;G:1444779781;T:1613327573;N:9710 | 150 | 150 | 1625173848 | 1409934388 | 1444779781 | 1613327573 | 9710 | SRX7525038 | SRS5964473 | SRA1022555 | Ocean University of China|Institute of Evolution & Marine Biodiversity | Ocean University of China | 2 | 0.92166 | 0.92524 | 0.08115 | 0.08224 | 0.65782 | 0.67194 | 0.49537 | 0.49642 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2020-01-08 | Adult | Adult | Gonad | Reproductive System |