run_metadata: 55959
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55959 | SRR10828003 | SRX7501381 | SRS5942781 | SRP239446 | PRJNA598916 | Zebrafish intestinal gene expression | PRJNA598916 | Other | An analysis of zebrafish intestinal gene expression | ZR003 | strain:5D|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|dev stage:Adult|sex:male|tissue:whole intestine|replicate:replicate3|BioSampleModel:Model organism or animal | RNA Seq of Danio rerio: adult 5D intestine | ZR003 | ZR003 | Illumina Paired end sequencing | RNA-Seq | TRANSCRIPTOMIC | PolyA | PAIRED | ILLUMINA | Illumina HiSeq 4000 | SRP239446 | lane9-ZR003_S00_L009_R1_001.fastq.gz lane9-ZR003_S00_L009_R2_001.fastq.gz | fastq fastq | 11201243420.0 | 37090210.0 | lane9 ZR003 S00 L009 R1 001.fastq.gz | 0:151 1:151 | A:3127283035;C:2496207030;G:2513262555;T:3063404560;N:1086240 | 151 | 151 | 3127283035 | 2496207030 | 2513262555 | 3063404560 | 1086240 | SRX7501381 | SRS5942781 | SRA1020118 | Oregon State University|Microbiology | Oregon State University | 2 | 0.86792 | 0.8632 | 0.06784 | 0.06862 | 0.78867 | 0.79308 | 0.53988 | 0.52892 | 151 | 151 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | United States | 2020-01-04 | Adult | Adult | Gut | Digestive System |