run_metadata: 55678
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55678 | SRR10728572 | SRX7404695 | SRS5852274 | SRP238052 | PRJNA596441 | Brain sex Differentiation | PRJNA596441 | Other | Brain sex differentiation | KO 2 | ORUCHN12455 | strain:AB|isolate:Brain 3.1|breed:animals|cultivar:zebrafish|ecotype:China|age:3.5 month|dev stage:Adult|sex:male|tissue:brain|BioSampleModel:Model organism or animal | Wild type brain | AHKYT7DSXX S60 | AHKYT7DSXX S60 | RNA cDNA fragmentation sequencing | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP238052 | S060_gooalgene-aabrain2_AHKYT7DSXX_S60_L001_001_1.fastq S060_gooalgene-aabrain2_AHKYT7DSXX_S60_L001_001_2.fastq | fastq fastq | 6412146000.0 | 21373820.0 | S060 gooalgene aabrain2 AHKYT7DSXX S60 L001 001 1.fastq | 0:150 1:150 | A:1818102509;C:1381306760;G:1470846044;T:1741841406;N:49281 | 150 | 150 | 1818102509 | 1381306760 | 1470846044 | 1741841406 | 49281 | SRX7404695 | SRS5852274 | SRA1013773 | orebro University|School of Science and Technology | orebro University | 2 | 0.92216 | 0.91649 | 0.16734 | 0.16488 | 0.70256 | 0.70713 | 0.48061 | 0.48416 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | Sweden | 2019-12-18 | Adult | Adult | Brain | Nervous System |