run_metadata: 55656
This data as json
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| 55656 | SRR10674411 | SRX7351702 | SRS5811185 | SRP237283 | PRJNA595113 | Transcriptomic responses of Bisphenol S on zebrafish | PRJNA595113 | Other | To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations. | BPS 10 3 | isolate:biologocal replicate 9|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal | Transcriptomic responses of Bisphenol S | bps050109 | bps050109 | An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group. | RNA-Seq | TRANSCRIPTOMIC | RANDOM PCR | PAIRED | BGISEQ | BGISEQ-500 | SRP237283 | BPS_10_3_1.fq.gz BPS_10_3_2.fq.gz | fastq fastq | 6969574800.0 | 69695748.0 | BPS 10 3 1.fq.gz | 0:100 1:100 | A:1860393053;C:1631995190;G:1597357772;T:1879188120;N:640665 | 100 | 100 | 1860393053 | 1631995190 | 1597357772 | 1879188120 | 640665 | SRX7351702 | SRS5811185 | SRA1010884 | Southern University of Science and Technology|School of Environmental Science and Engineering | Southern University of Science and Technology | 1 | 0.94597 | 0.10542 | 0.68016 | 0.4666 | 100 | B | usable mapping rate | bgi | bgi | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2019-12-12 | Larval | Larval | Embryo Imprecise | All anatomical structures |