run_metadata: 55471
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55471 | SRR10425377 | SRX7121462 | SRS5631394 | SRP229414 | PRJNA588649 | RNA sequencing for differential expression gene screening in zebrafish post DEHP and DBP exposure | PRJNA588649 | Other | con 3 | sample title for replicate:0 3|strain:AB|age:96hpf|sex:pooled male and female|tissue:embryo|BioSampleModel:Model organism or animal | con 3 | 0 3 | 0 3 | RNA sequencing for differential expression gene screening in zebrafish post DEHP and DBP exposure | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP229414 | 160653A_con_3_S7_L002_R2_001.fastq.gz 160653A_con_3_S7_L002_R1_001.fastq.gz 160653A_con_3_S7_L001_R2_001.fastq.gz 160653A_con_3_S7_L001_R1_001.fastq.gz | fastq fastq fastq fastq | 4645800774.0 | 18572727.0 | 160653A con 3 S7 L001 R1 001.fastq.gz | 0:125.05 1:125.09 | A:1251751873;C:1054269377;G:1062381476;T:1252233640;N:25164408 | 125 | 125 | 1251751873 | 1054269377 | 1062381476 | 1252233640 | 25164408 | SRX7121462 | SRS5631394 | SRA993820 | Chinese academy of fishery sciences|fishery Resource and Environmental Research Center | Chinese academy of fishery sciences | 2 | 0.9211 | 0.92397 | 0.13775 | 0.13782 | 0.6703 | 0.6728 | 0.46466 | 0.46374 | 125 | 125 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2019-11-11 | Larval | Larval | Embryo Imprecise | All anatomical structures |