run_metadata: 55464
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55464 | SRR10423789 | SRX7119877 | SRS5629994 | SRP229377 | PRJNA588504 | Transcriptomic characterization of zebrafish larvae in response to lindane exposure. | PRJNA588504 | Other | Lindane is a highly toxic organochlorine pesticide and widespread in aquatic environment that can cause deleterious effects on fish. Although some lindane regulated genes have been investigated in fish the transcriptional responses of fish larvae to acute lindane exposure are not well understood. In this study RNA sequencing was used to examine the transcriptional changes in developing zebrafish larvae under a low concentration of lindane exposure from 96 to 120hpf. Our resultes provide useful insights to help further understand the transcriptional response of zebrafish larvae under acute exposure to lindane. | Lin120h | breed:not collected|dev stage:120h|sex:pooled male and female|tissue:Whole fish|BioSampleModel:Model organism or animal | Zebrafish larvae at 96h exposed to Lindane for xxx h | Lin120h | Lin120h | zebrafish | RNA-Seq | TRANSCRIPTOMIC | other | PAIRED | ILLUMINA | Illumina HiSeq 4000 | SRP229377 | Lin120h_R2.fq.gz Lin120h_R1.fq.gz | fastq fastq | 14029985008.0 | 46456904.0 | Lin120h R1.fq.gz | 0:151 1:151 | A:3703851299;C:3286864966;G:3398465264;T:3640669046;N:134433 | 151 | 151 | 3703851299 | 3286864966 | 3398465264 | 3640669046 | 134433 | SRX7119877 | SRS5629994 | SRA993647 | Wuhan University|Department of Genetics | Wuhan University | 2 | 0.94543 | 0.95153 | 0.07203 | 0.07111 | 0.67411 | 0.6799 | 0.46566 | 0.4813 | 151 | 151 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2019-11-09 | Larval | Larval | Whole Organism | All anatomical structures |