run_metadata: 55317
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55317 | SRR11092488 | SRX7731306 | SRS6151713 | SRP226922 | PRJNA577226 | Danio rerio breed:AB Transcriptome or Gene expression | PRJNA577226 | Other | EpiGreen project investigated the nutrigenomic and nutriepigenomic effects of plant protein based diets on fish using zebrafish as a model. This study was also extended to a commercially important species Atlantic salmon. Ultimately this knowledge would be benefited for the industry to formulate sustainable diets based on terrestrial ingredients with properly addressing fish welfare concerns. | fast muscle | soy fishm6 | strain:AB|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:laboratory|age:6 month|dev stage:adult|sex:female|tissue:fast muscle|biomaterial provider:zebrafish lab Nord University|birth location:zebrafish lab Nord University|collected by:Anusha K.S.Dhanasiri Nord University|collection date:2017 09|health state:Healthy|treatment:soy replicate6|BioSampleModel:Model organism or animal | RNASeq of zebrafish: adult female fast muscle | sm6 | sm6 | Directional RNA libraries with PolyA mRNA enrichment | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | SINGLE | ILLUMINA | NextSeq 550 | SRP226922 | sm6.fastq.gz | fastq | 1476347044.0 | 19425619.0 | sm6.fastq.gz | 0:76 1:0 | A:370448815;C:361460384;G:341504966;T:402855002;N:77877 | 76 | 0 | 370448815 | 361460384 | 341504966 | 402855002 | 77877 | SRX7731306 | SRS6151713 | SRA1043309 | Nord Universitet|Faculty of Biosciences and Aquaculture | Nord Universitet | 1 | 0.96435 | 0.06773 | 0.83049 | 0.50288 | 76 | B | usable mapping rate | illumina | nextseq | unknown | poly_a | unknown | bulk | unknown | unknown | Norway | 2020-02-15 | Adult | Adult | Muscle | Muscular System |