run_metadata: 55304
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55304 | SRR10267097 | SRX6980542 | SRS5505501 | SRP225201 | PRJNA576995 | RNA sequencing for differential expression gene screening in zebrafish | PRJNA576995 | Other | To screen differential expression genes in zebrafish following BPF exposure | case1 1 | sample title for replicate:1 1|strain:not applicable|age:48 hpf|sex:pooled male and female|tissue:embryo|BioSampleModel:Model organism or animal | 1 1 | 1 1 | 1 1 | zebrafish embryo samples | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP225201 | 170296A-case1-1_HGLWJALXX_L3_1.fq.gz 170296A-case2-1_HGLWJALXX_L3_2.fq.gz | fastq fastq | 9593332800.0 | 31977776.0 | 170296A case1 1 HGLWJALXX L3 1.fq.gz | 0:150 1:150 | A:2527044547;C:2268335173;G:2277186987;T:2519119012;N:1647081 | 150 | 150 | 2527044547 | 2268335173 | 2277186987 | 2519119012 | 1647081 | SRX6980542 | SRS5505501 | SRA977706 | Chinese academy of fishery sciences|fishery Resource and Environmental Research Center | Chinese academy of fishery sciences | 2 | 0.93213 | 0.93298 | 0.09449 | 0.09434 | 0.65772 | 0.66596 | 0.46597 | 0.46237 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2019-10-11 | Hatching | Embryo | Embryo Imprecise | All anatomical structures |