run_metadata: 55302
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55302 | SRR10267095 | SRX6980544 | SRS5505503 | SRP225201 | PRJNA576995 | RNA sequencing for differential expression gene screening in zebrafish | PRJNA576995 | Other | To screen differential expression genes in zebrafish following BPF exposure | case1 3 | sample title for replicate:1 3|strain:not applicable|age:48 hpf|sex:pooled male and female|tissue:embryo|BioSampleModel:Model organism or animal | 1 3 | 1 3 | 1 3 | zebrafish embryo samples | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP225201 | 170296A-case1-3_HGLWJALXX_L4_1.fq.gz 170296A-case2-3_HGLWJALXX_L4_2.fq.gz | fastq fastq | 7223133300.0 | 24077111.0 | 170296A case1 3 HGLWJALXX L4 1.fq.gz | 0:150 1:150 | A:1925695574;C:1683782909;G:1684865390;T:1928620280;N:169147 | 150 | 150 | 1925695574 | 1683782909 | 1684865390 | 1928620280 | 169147 | SRX6980544 | SRS5505503 | SRA977706 | Chinese academy of fishery sciences|fishery Resource and Environmental Research Center | Chinese academy of fishery sciences | 2 | 0.92712 | 0.92938 | 0.10141 | 0.10152 | 0.65206 | 0.65924 | 0.46219 | 0.46826 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2019-10-11 | Hatching | Embryo | Embryo Imprecise | All anatomical structures |