run_metadata: 55238
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55238 | SRR10199502 | SRX6919642 | SRS5450528 | SRP223604 | PRJNA574807 | comparative transcriptome between wildtype and chr23 KO zebrafish. | PRJNA574807 | Other | the comparative transcriptome between wildtype and chr23 KO zebrafish were analyzed to uncover the cause of the failure of the oocyte maturation and ovulation in chr23 KO. | WTHY replicate 2 | strain:AB line|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:7 month|dev stage:sex mature|sex:female|tissue:hypothalamus|BioSampleModel:Model organism or animal | RNA Seq of Danio rerio: adult female hypothalamus | WT HY2 | WT HY2 | the libraries were constructed and sequenced on Illumina HiSeq using paired end protocol by GENEWIZ Biotechnology Co. LTD | RNA-Seq | TRANSCRIPTOMIC | RANDOM | PAIRED | ILLUMINA | HiSeq X Ten | SRP223604 | WT-HY2_combined_R1.fastq.gz WT-HY2_combined_R2.fastq.gz | fastq fastq | 7302482700.0 | 24341609.0 | WT HY2 combined R1.fastq.gz | 0:150 1:150 | A:2142054234;C:1508440530;G:1515506742;T:2136237150;N:244044 | 150 | 150 | 2142054234 | 1508440530 | 1515506742 | 2136237150 | 244044 | SRX6919642 | SRS5450528 | SRA969652 | Huazhong Agricultural University|College of Fisheries | Huazhong Agricultural University | 2 | 0.90359 | 0.90475 | 0.18984 | 0.18986 | 0.71143 | 0.71762 | 0.50683 | 0.51228 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2019-09-29 | Adult | Adult | Brain | Nervous System |