run_metadata: 55230
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55230 | SRR10199494 | SRX6919650 | SRS5450536 | SRP223604 | PRJNA574807 | comparative transcriptome between wildtype and chr23 KO zebrafish. | PRJNA574807 | Other | the comparative transcriptome between wildtype and chr23 KO zebrafish were analyzed to uncover the cause of the failure of the oocyte maturation and ovulation in chr23 KO. | WTOV replicate 3 | strain:AB line|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:14 month|dev stage:sex mature|sex:female|tissue:ovary|BioSampleModel:Model organism or animal | RNA Seq of Danio rerio: adult female ovary | WT OV3 | WT OV3 | the libraries were constructed and sequenced on Illumina HiSeq using paired end protocol by GENEWIZ Biotechnology Co. LTD | RNA-Seq | TRANSCRIPTOMIC | RANDOM | PAIRED | ILLUMINA | HiSeq X Ten | SRP223604 | WT-OV3_combined_R1.fastq.gz WT-OV3_combined_R2.fastq.gz | fastq fastq | 7561018500.0 | 25203395.0 | WT OV3 combined R1.fastq.gz | 0:150 1:150 | A:1960975544;C:1812551077;G:1817428088;T:1969970252;N:93539 | 150 | 150 | 1960975544 | 1812551077 | 1817428088 | 1969970252 | 93539 | SRX6919650 | SRS5450536 | SRA969652 | Huazhong Agricultural University|College of Fisheries | Huazhong Agricultural University | 2 | 0.93185 | 0.9347 | 0.0198 | 0.0201 | 0.76114 | 0.76816 | 0.48035 | 0.48723 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2019-09-29 | Adult | Adult | Gonad | Reproductive System |