run_metadata: 54308
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54308 | SRR10129346 | SRX6857766 | SRS5395649 | SRP221863 | PRJNA565584 | The functions of igf2bp3 during zebrafish early development | PRJNA565584 | Whole Genome Sequencing | RNA seq and RIP seq data of wild type and maternal igf2bp3 mutant embryos at different stages. | Model organism or animal sample from Danio rerio | RIP seq zebrafish embryo IgG rabbit | strain:AB|dev stage:embryo|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal | RIP seq zebrafish embryo sphere IgG | IgG sphere | IgG sphere | RIP seq | RIP-Seq | TRANSCRIPTOMIC | other | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP221863 | IgG1_R1.fq.gz IgG1_R2.fq.gz | fastq fastq | 2647374600.0 | 8824582.0 | IgG1 R1.fq.gz | 0:150 1:150 | A:565620765;C:650153559;G:936592543;T:494992101;N:15632 | 150 | 150 | 565620765 | 650153559 | 936592543 | 494992101 | 15632 | SRX6857766 | SRS5395649 | SRA962944 | Huazhong Agricultural University|College of Fisheries | Huazhong Agricultural University | 2 | 0.95349 | 0.96423 | 0.33504 | 0.34458 | 0.93748 | 0.93726 | 0.85176 | 0.91118 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2019-09-17 | Blastula | Embryo | Embryo Imprecise | All anatomical structures |