run_metadata: 53850
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53850 | SRR10393515 | SRX7093878 | SRS5606528 | SRP228416 | PRJNA563973 | High Content Screening in Zebrafish Identifies Perfluorooctanesulfonamide PFOSA as a Potent Developmental Toxicant | PRJNA563973 | Other | The objective of this study was to rely on mRNA sequencing to quantify whole transcriptome responses to perfluorooctanesulfonamide PFOSA exposure within the first 24 h of zebrafish development. | DMSO 14hpf 2 S8 | strain:5D|isolate:2|dev stage:14 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal | DMSO 14hpf 2 S8 | DMSO 14hpf 2 S8 | DMSO 14hpf 2 S8 | QuantSeq three prime mRNA Seq Library Prep Kit FWD | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | SINGLE | ILLUMINA | Illumina MiniSeq | SRP228416 | DMSO-14hpf-2_S8_L001_R1_001.fastq.gz | fastq | 205823576.0 | 2741804.0 | DMSO 14hpf 2 S8 L001 R1 001.fastq.gz | 0:75.07 1:0 | A:76605742;C:38535627;G:53129399;T:36836758;N:716050 | 75 | 0 | 76605742 | 38535627 | 53129399 | 36836758 | 716050 | SRX7093878 | SRS5606528 | SRA989836 | University of California, Riverside|Environmental Sciences | University of California, Riverside | 1 | 0.59432 | 0.17094 | 0.86005 | 0.62198 | 75 | B | usable mapping rate | illumina | miseq | 3prime | poly_a | lexogen | bulk | unknown | unknown | United States | 2019-11-05 | Segmentation | Embryo | Embryo Imprecise | All anatomical structures |