run_metadata: 53838
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53838 | SRR10393503 | SRX7093890 | SRS5606540 | SRP228416 | PRJNA563973 | High Content Screening in Zebrafish Identifies Perfluorooctanesulfonamide PFOSA as a Potent Developmental Toxicant | PRJNA563973 | Other | The objective of this study was to rely on mRNA sequencing to quantify whole transcriptome responses to perfluorooctanesulfonamide PFOSA exposure within the first 24 h of zebrafish development. | DMSO 24hpf 4 S2 | strain:5D|isolate:8|dev stage:24 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal | DMSO 24hpf 4 S2 | DMSO 24hpf 4 S2 | DMSO 24hpf 4 S2 | QuantSeq three prime mRNA Seq Library Prep Kit FWD | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | SINGLE | ILLUMINA | Illumina MiniSeq | SRP228416 | DMSO-24hpf-4_S2_L001_R1_001.fastq.gz | fastq | 169544605.0 | 2252683.0 | DMSO 24hpf 4 S2 L001 R1 001.fastq.gz | 0:75.26 1:0 | A:61748050;C:32984735;G:39276677;T:35329305;N:205838 | 75 | 0 | 61748050 | 32984735 | 39276677 | 35329305 | 205838 | SRX7093890 | SRS5606540 | SRA989836 | University of California, Riverside|Environmental Sciences | University of California, Riverside | 1 | 0.69109 | 0.19681 | 0.82954 | 0.60982 | 76 | B | usable mapping rate | illumina | miseq | 3prime | poly_a | lexogen | bulk | unknown | unknown | United States | 2019-11-05 | Pharyngula | Embryo | Embryo Imprecise | All anatomical structures |