run_metadata: 53492
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53492 | SRR9945460 | SRX6694019 | SRS5251305 | SRP218026 | PRJNA557895 | The origin and evolution of RNA editing in Metazoan | PRJNA557895 | Other | We shed light on the origin and evolution of RNA editing in Metazoan by selected representative 22 species 18 of which were sequenced by ourselves. | Replicate 3 for D.rerio | isolate:Drer 3|age:not collected|dev stage:not collected|sex:not collected|tissue:whole body|BioSampleModel:Model organism or animal | Strand specific RNA seq of Danio rerio rep3: whole body | DrerWHANIddyEAAPRAAPEI 219 | DrerWHANIddyEAAPRAAPEI 219 | Both genomic DNA and total RNA were extracted from the whole body of an adult. The strand specific RNA seq library was prepared using the TruSeq Stranded mRNA LT Sample Prep RS 122 2101 Illumina and sequenced on the Illumina HiSeq 4000 platform according to the manufacturer's instructions. The DNA library was prepared using the MGIEasy DNA Library Prep Kit V1.1 MGI Tech and sequenced on the BGISEQ 500RS platform according to the manufacturer's instructions. | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina HiSeq 4000 | SRP218026 | 170403_I133_FCHGL72BBXX_L6_WHANIddyEAAPRAAPEI-219_1.fq.gz 170403_I133_FCHGL72BBXX_L6_WHANIddyEAAPRAAPEI-219_2.fq.gz | fastq fastq | 28065364200.0 | 140326821.0 | 170403 I133 FCHGL72BBXX L6 WHANIddyEAAPRAAPEI 219 1.fq.gz | 0:100 1:100 | A:7411372143;C:6577171300;G:6693925569;T:7377537100;N:5358088 | 100 | 100 | 7411372143 | 6577171300 | 6693925569 | 7377537100 | 5358088 | SRX6694019 | SRS5251305 | SRA937931 | Kunming Institute of Zoology, Chinese Academy of Sciences|State Key Laboratory of Genetic Resources and Evol | Kunming Institute of Zoology, Chinese Academy of Sciences | 2 | 0.94764 | 0.95274 | 0.06893 | 0.06709 | 0.68966 | 0.69154 | 0.49095 | 0.52264 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | poly_a | trueseq | bulk | unknown | unknown | China | 2019-08-11 | Adult | Adult | Trunk | Surface Structure |