run_metadata: 53491
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53491 | SRR9945455 | SRX6694024 | SRS5251306 | SRP218026 | PRJNA557895 | The origin and evolution of RNA editing in Metazoan | PRJNA557895 | Other | We shed light on the origin and evolution of RNA editing in Metazoan by selected representative 22 species 18 of which were sequenced by ourselves. | Replicate 1 for D.rerio | isolate:Drer 1|age:not collected|dev stage:not collected|sex:not collected|tissue:whole body|BioSampleModel:Model organism or animal | Strand specific RNA seq of Danio rerio rep1: whole body | DrerWHINSpmnpBABRAAPEI 219 | DrerWHINSpmnpBABRAAPEI 219 | Both genomic DNA and total RNA were extracted from the whole body of an adult. The strand specific RNA seq library was prepared using the TruSeq Stranded mRNA LT Sample Prep RS 122 2101 Illumina and the DNA library was constructed according to the standard protocol provided by Illumina San Diego CA USA. Paired end sequencing was performed for the two libraries on the HiSeq 4000 platform according to the manufacturer's instructions. | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina HiSeq 4000 | SRP218026 | 160415_I136_FCH7MJKBBXX_L4_WHINSpmnpBABRAAPEI-219_1.fq.gz 160415_I136_FCH7MJKBBXX_L4_WHINSpmnpBABRAAPEI-219_2.fq.gz | fastq fastq | 23885022200.0 | 119425111.0 | 160415 I136 FCH7MJKBBXX L4 WHINSpmnpBABRAAPEI 219 1.fq.gz | 0:100 1:100 | A:6260820125;C:5693318287;G:5662248033;T:6264079999;N:4555756 | 100 | 100 | 6260820125 | 5693318287 | 5662248033 | 6264079999 | 4555756 | SRX6694024 | SRS5251306 | SRA937931 | Kunming Institute of Zoology, Chinese Academy of Sciences|State Key Laboratory of Genetic Resources and Evol | Kunming Institute of Zoology, Chinese Academy of Sciences | 2 | 0.9539 | 0.95672 | 0.05875 | 0.05826 | 0.70782 | 0.70885 | 0.50825 | 0.51884 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | poly_a | trueseq | bulk | unknown | unknown | China | 2019-08-11 | Adult | Adult | Trunk | Surface Structure |