run_metadata: 52893
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52893 | SRR9333946 | SRX6100405 | SRS5000908 | SRP202062 | PRJNA550012 | Transcriptome analysis of innate immune response in notch1a mutant and wide type zebrafish activated by microinjection Vibrio parahaemolyticus | PRJNA550012 | Other | we generated notch1a mutant zebrafish line and then we infected notch1a mutant and wide type zebrafish by microinjection. The role of notch1a in innnate immune response was analyzed. | infection 3 | WTVp3 | strain:AB line|age:3dpf|sex:not determined|tissue:whole larvae|sample type:replicate3|treatment:infection|BioSampleModel:Model organism or animal | infection | WTVp3 | WTVp3 | 3dpf whole larvae control | RNA-Seq | TRANSCRIPTOMIC | other | PAIRED | ILLUMINA | Illumina HiSeq 4000 | SRP202062 | WT VP 3 R1 WT VP 3 R2 | fastq fastq | 8828767500.0 | 29429225.0 | WT VP 3 R1.gz | 0:150 1:150 | A:2169141529;C:2239438424;G:2237766047;T:2182246217;N:175283 | 150 | 150 | 2169141529 | 2239438424 | 2237766047 | 2182246217 | 175283 | SRX6100405 | SRS5000908 | SRA901699 | Shanghai Ocean University|College of Fisheries and Life Science | Shanghai Ocean University | 2 | 0.95661 | 0.95303 | 0.01647 | 0.01662 | 0.77305 | 0.78159 | 0.46349 | 0.46225 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2019-06-21 | Larval | Larval | Whole Organism | All anatomical structures |