run_metadata: 52874
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52874 | SRR9325688 | SRX6092605 | SRS4993651 | SRP201813 | PRJNA549547 | Transcriptome analysis of innate immune response activated by Vibrio parahaemolyticus | PRJNA549547 | Other | In this study we analyzed the transcriptome data between control and infection groups. GO terms and KEGG pathways were found which related to innate immune response activated by Vibrio parahaemolyticus. | infection 3 | I3 | strain:AB line|age:3dpf|sex:not determined|tissue:whole larvae|sample type:replicate3|treatment:infection|BioSampleModel:Model organism or animal | infection | I3 | I3 | 3dpf whole larvae control | RNA-Seq | TRANSCRIPTOMIC | other | PAIRED | ILLUMINA | Illumina HiSeq 4000 | SRP201813 | I6R1 I6R2 | fastq fastq | 5131234586.0 | 16990843.0 | I6R1.gz | 0:151 1:151 | A:1358543385;C:1210921479;G:1270192482;T:1290573589;N:1003651 | 151 | 151 | 1358543385 | 1210921479 | 1270192482 | 1290573589 | 1003651 | SRX6092605 | SRS4993651 | SRA900855 | Shanghai Ocean University|College of Fisheries and Life Science | Shanghai Ocean University | 2 | 0.94644 | 0.94835 | 0.04436 | 0.04422 | 0.71845 | 0.72835 | 0.46647 | 0.46929 | 151 | 151 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2019-06-19 | Larval | Larval | Whole Organism | All anatomical structures |