run_metadata: 52341
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52341 | SRR9141305 | SRX5914453 | SRS4832641 | SRP199735 | PRJNA545244 | Zebrafish transcriptome data | PRJNA545244 | Other | Heavy metals stimulate zebrafish | Drt1 1 aliquot | isolate:missing|age:missing|sex:male|tissue:intestinal|tmp:Drt1 1|BioSampleModel:Model organism or animal | RNA Seq of Danio rerio: adult female gut | Drt1 1 | Drt1 1 | Gene expression in zebrafish stimulated by heavy metals | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina HiSeq X Ten | SRP199735 | Drt1-1 (pooling35-ACAGTG_HY2FYCCXY_L8_1.fq and pooling35-ACAGTG_HY2FYCCXY_L8_2.fq).gz | fastq | 3657007500.0 | 24380050.0 | Drt1 1 pooling35 ACAGTG HY2FYCCXY L8 1.fq and pooling35 ACAGTG HY2FYCCXY L8 2.fq.gz | 0:150 1:0 | A:963212012;C:848159609;G:822435259;T:1023096853;N:103767 | 150 | 0 | 963212012 | 848159609 | 822435259 | 1023096853 | 103767 | SRX5914453 | SRS4832641 | SRA891446 | Kunming University of Science and Technology|College of Life Science | Kunming University of Science and Technology | 1 | 0.92318 | 0.03725 | 0.72997 | 0.48413 | 150 | B | usable mapping rate | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2019-05-29 | Adult | Adult | Gut | Digestive System |