run_metadata: 52340
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52340 | SRR9141304 | SRX5914454 | SRS4832642 | SRP199735 | PRJNA545244 | Zebrafish transcriptome data | PRJNA545244 | Other | Heavy metals stimulate zebrafish | Drck3 aliquot | isolate:missing|age:missing|sex:male|tissue:intestinal|tmp:Drck3|BioSampleModel:Model organism or animal | RNA Seq of Danio rerio: adult female gut | Drck3 | Drck3 | Gene expression in zebrafish stimulated by heavy metals | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina HiSeq X Ten | SRP199735 | Drck3 (pooling35-TAGCTT_HY2FYCCXY_L8_1.fq and pooling35-TAGCTT_HY2FYCCXY_L8_2.fq).gz | fastq | 4199739150.0 | 27998261.0 | Drck3 pooling35 TAGCTT HY2FYCCXY L8 1.fq and pooling35 TAGCTT HY2FYCCXY L8 2.fq.gz | 0:0 1:150 | A:1173351504;C:941132248;G:1019438569;T:1065634216;N:182613 | 0 | 150 | 1173351504 | 941132248 | 1019438569 | 1065634216 | 182613 | SRX5914454 | SRS4832642 | SRA891446 | Kunming University of Science and Technology|College of Life Science | Kunming University of Science and Technology | 1 | 0.92976 | 0.0377 | 0.71709 | 0.48608 | 150 | B | usable mapping rate | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2019-05-29 | Adult | Adult | Gut | Digestive System |