run_metadata: 52315
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52315 | SRR10490658 | SRX7179779 | SRS5686596 | SRP230531 | PRJNA544341 | PPAR? agonist induced disruption of dorsoventral patterning in zebrafish | PRJNA544341 | Other | The objectives of this study were to rely on mRNA sequencing to identify pathways that may be impacted following exposure to ciglitazone in the presence or absence of dorsomorphin within the first 24 h of development. | CigDMP 24hpf 1 S10 | strain:5D|isolate:5|dev stage:24 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal | CigDMP 24hpf 1 S10 | CigDMP 24hpf 1 S10 | CigDMP 24hpf 1 S10 | QuantSeq three prime mRNA Seq Library Prep Kit FWD | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | SINGLE | ILLUMINA | Illumina MiniSeq | SRP230531 | CigDMP-24hpf-1_S10_L001_R1_001.fastq.gz | fastq | 166244445.0 | 2206862.0 | CigDMP 24hpf 1 S10 L001 R1 001.fastq.gz | 0:75.33 1:0 | A:56629344;C:30735682;G:37080320;T:41653531;N:145568 | 75 | 0 | 56629344 | 30735682 | 37080320 | 41653531 | 145568 | SRX7179779 | SRS5686596 | SRA998591 | University of California, Riverside|Environmental Sciences | University of California, Riverside | 1 | 0.79315 | 0.14174 | 0.81199 | 0.59223 | 75 | B | usable mapping rate | illumina | miseq | 3prime | poly_a | lexogen | bulk | unknown | unknown | United States | 2019-11-19 | Pharyngula | Embryo | Embryo Imprecise | All anatomical structures |