run_metadata: 52293
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52293 | SRR9077097 | SRX5852360 | SRS4776353 | SRP198708 | PRJNA543385 | mRNA sequence of zebrafish head and body | PRJNA543385 | Other | RNA was isolated from zebrafish head and body separately and followed with standardised Illumina sequencing | body1 kd+mt | s10 | breed:zebrafish|dev stage:adult|sex:NA|tissue:body5|BioSampleModel:Model organism or animal | body1 kd+mt | WC TC 059 | WC TC 059 | TRUEseq standardised protocol | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | PAIRED | ILLUMINA | Illumina HiSeq 2000 | SRP198708 | WC_TC_059_S10.R2.fastq.gz WC_TC_059_S10.R1.fastq.gz | fastq fastq | 6271465432.0 | 41259641.0 | WC TC 059 S10.R1.fastq.gz | 0:101 1:51 | A:1629820249;C:1502782160;G:1459060597;T:1675172643;N:4629783 | 101 | 51 | 1629820249 | 1502782160 | 1459060597 | 1675172643 | 4629783 | SRX5852360 | SRS4776353 | SRA887738 | Southern University of Science and Technology|Department of Biology | Southern University of Science and Technology | 2 | 0.96576 | 0.96033 | 0.06782 | 0.07173 | 0.73547 | 0.74014 | 0.45453 | 0.45359 | 101 | 51 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | other | trueseq | bulk | unknown | unknown | China | 2019-10-08 | Adult | Adult | Trunk | Surface Structure |