run_metadata: 52292
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52292 | SRR9077096 | SRX5852361 | SRS4776354 | SRP198708 | PRJNA543385 | mRNA sequence of zebrafish head and body | PRJNA543385 | Other | RNA was isolated from zebrafish head and body separately and followed with standardised Illumina sequencing | head1 kd+mt | s5 | breed:zebrafish|dev stage:adult|sex:NA|tissue:head5|BioSampleModel:Model organism or animal | head1 kd+mt | WC TC 045 | WC TC 045 | TRUEseq standardised protocol | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | PAIRED | ILLUMINA | Illumina HiSeq 2000 | SRP198708 | WC_TC_045_S12.R1.fastq.gz WC_TC_045_S12.R2.fastq.gz | fastq fastq | 4914615696.0 | 32332998.0 | WC TC 045 S12.R1.fastq.gz | 0:101 1:51 | A:1304784949;C:1154087581;G:1119502459;T:1335912697;N:328010 | 101 | 51 | 1304784949 | 1154087581 | 1119502459 | 1335912697 | 328010 | SRX5852361 | SRS4776354 | SRA887738 | Southern University of Science and Technology|Department of Biology | Southern University of Science and Technology | 2 | 0.95742 | 0.95094 | 0.10146 | 0.1069 | 0.69686 | 0.69978 | 0.47629 | 0.469 | 101 | 51 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | other | trueseq | bulk | unknown | unknown | China | 2019-10-08 | Adult | Adult | Head | Nervous System |