run_metadata: 52239
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52239 | SRR9044115 | SRX5820655 | SRS4749299 | SRP197695 | PRJNA542436 | Regulation of hematopoiesis and endothelium function by endocytic trafficking | PRJNA542436 | Other | Endocytic trafficking in endothelium | CT2 | strain:AB|isolate:ctrl MO fluorescence activated cell sorting 2|cultivar:not applicable|ecotype:not applicable|age:1 year|sex:male and female|tissue:fli1a+ endothelium|BioSampleModel:Model organism or animal | RNA seq of endothelial cells2 | ct1 20192 | ct1 20192 | ctrl MO 2 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | SINGLE | ILLUMINA | Illumina NovaSeq 6000 | SRP197695 | CT2.gz | fastq | 3992117700.0 | 26614118.0 | CT2.gz | 0:150 1:0 | A:1040923084;C:961956867;G:964333886;T:1024896832;N:7031 | 150 | 0 | 1040923084 | 961956867 | 964333886 | 1024896832 | 7031 | SRX5820655 | SRS4749299 | SRA885405 | Chinese academy of sciences|institute of zoology | Chinese academy of sciences | 1 | 0.95545 | 0.087 | 0.78488 | 0.46466 | 150 | B | usable mapping rate | illumina | novaseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2019-05-11 | Adult | Adult | Endothelium | Cardiovascular System |