run_metadata: 51813
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51813 | SRR8862073 | SRX5649485 | SRS4594850 | SRP191202 | PRJNA531242 | Zebrafish Otolith Biomineralization Requires Polyketide Synthase | PRJNA531242 | Other | RNA seq analysis of nco no content zebrafish embryos at 24 hpf | nco mutant | strain:AB|age:24hpf|sex:pooled male and female|tissue:Whole embryo lysate|genotype:nco|phenotype:otolith agenesis|BioSampleModel:Model organism or animal | RNA Seq of 24hpf Danio rerio nco | nco | nco | Expression profiling by high throughput sequencing | RNA-Seq | TRANSCRIPTOMIC | RANDOM | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP191202 | MUT_accepted_hits.bam | bam | 4123578221.0 | 41065807.0 | MUT accepted hits.bam | 0:100.41 | A:1067146358;C:996426621;G:980020305;T:1079981310;N:3627 | 100 | 1067146358 | 996426621 | 980020305 | 1079981310 | 3627 | SRX5649485 | SRS4594850 | SRA870334 | Creighton University|Biomedical Sciences | Creighton University | 1 | 0.9923 | 0.06787 | 0.69901 | 0.46967 | 101 | B | usable mapping rate | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | United States | 2019-04-06 | Pharyngula | Embryo | Whole Organism | All anatomical structures |