run_metadata: 51763
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51763 | SRR9850643 | SRX6605290 | SRS5170119 | SRP216607 | PRJNA529921 | mRNA Sequencing Identifies Liver as a Potential Target Organ for Triphenyl Phosphate in Embryonic Zebrafish | PRJNA529921 | Other | The objectives of this study were to 1 rely on mRNA sequencing to identify pathways before and post cardiac looping 30 hpf and 48 hpf respectively that may be impacted following exposure to 10 µM TPHP from 24 hpf 48 hpf and 2 determine whether pre treatment with 2 µM fenretinide from 24 hpf 30 hpf mitigates cardiotoxicity related pathways within embryos exposed to TPHP from xxx 48 hpf. | TPHP 48H 3 S2 rep2 | strain:5D|isolate:24|dev stage:48 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal | TPHP 48H 3 S2 rep2 | TPHP 48H 3 S2 rep2 | TPHP 48H 3 S2 rep2 | QuantSeq three prime mRNA Seq Library Prep Kit FWD | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | SINGLE | ILLUMINA | Illumina MiniSeq | SRP216607 | TPHP-48H-3_S2_L001_R1_001-rep2.fastq.gz | fastq | 201995837.0 | 2701581.0 | TPHP 48H 3 S2 L001 R1 001 rep2.fastq.gz | 0:74.77 1:0 | A:67014042;C:36598764;G:54981173;T:42698036;N:703822 | 74 | 0 | 67014042 | 36598764 | 54981173 | 42698036 | 703822 | SRX6605290 | SRS5170119 | SRA928015 | University of California, Riverside|Environmental Sciences | University of California, Riverside | 1 | 0.79197 | 0.18414 | 0.81968 | 0.4218 | 75 | B | usable mapping rate | illumina | miseq | 3prime | poly_a | lexogen | bulk | unknown | unknown | United States | 2019-07-28 | Hatching | Embryo | Embryo Imprecise | All anatomical structures |