run_metadata: 51319
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51319 | SRR8735312 | SRX5528098 | SRS4494643 | SRP188580 | PRJNA527366 | Characterization of the key role of dachshund b in the development of the pancreatic islet in zebrafish Danio rerio | PRJNA527366 | Other | In this study we characterized the function of dachb the zebrafish homologue of human DACH1 in developing zebrafish embryos. Morpholino MO mediated knock down of dachb resulted in impaired islet cell development with a significant decrease in both the ß cell and islet cell numbers. | sample2 | strain:NA|isolate:NA|breed:NA|cultivar:NA|ecotype:NA|age:NA|dev stage:NA|sex:NA|tissue:embryos|genotype:p53MO|id:2|BioSampleModel:Model organism or animal | p53MO2 | 2 | 2 | rRNA depletion | RNA-Seq | TRANSCRIPTOMIC | RANDOM | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP188580 | 2_2.fastq.gz 2_1.fastq.gz | fastq fastq | 7923312236.0 | 39224318.0 | 2 1.fastq.gz | 0:101 1:101 | A:2115145426;C:1843204267;G:1845223955;T:2117945529;N:1793059 | 101 | 101 | 2115145426 | 1843204267 | 1845223955 | 2117945529 | 1793059 | SRX5528098 | SRS4494643 | SRA861332 | The Chinese University of Hong Kong|Department of Medicine and Therapeutics | The Chinese University of Hong Kong | 2 | 0.93137 | 0.93358 | 0.18665 | 0.18693 | 0.7025 | 0.70421 | 0.55171 | 0.55971 | 101 | 101 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2019-03-16 | Undetermined | Embryo | Embryo Imprecise | All anatomical structures |